Calibrating Seed-Based Heuristics to Map Short Reads With Sesame
نویسندگان
چکیده
منابع مشابه
5 Sesame Seed
Sesame (Sesamum indicum L.), otherwise known as sesamum or benniseed, member of the family Pedaliaceae, is one of the most ancient oilseeds crop known to mankind. Sesame plays an important role in human nutrition. Most of the sesame seeds are used for oil extraction and the rest are used for edible purposes (El Khier et al, 2008). Sesame is grown primarily for its oil-rich seeds. Before seeds w...
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The number of reports regarding sesame seed food allergy (SFA) has increased significantly worldwide over the past two decades, either due to a genuine increase in SFA or merely an increase in its awareness. Its prevalence is difficult to estimate due to the lack of well designed prospective population-based studies. Based on the available data, we estimate that SFA affects 0.1-0.2 % of the pop...
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The advent of high-throughput sequencing technologies constituted a major advance in genomic studies, offering new prospects in a wide range of applications. We propose a rigorous and flexible algorithmic solution to mapping SOLiD color-space reads to a reference genome. The solution relies on an advanced method of seed design that uses a faithful probabilistic model of read matches and, on the...
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ژورنال
عنوان ژورنال: Frontiers in Genetics
سال: 2020
ISSN: 1664-8021
DOI: 10.3389/fgene.2020.00572